29 Best Gluten Free Muffins

ByMolly Pisula Updated

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The following recipes make gluten-free muffins in all different ways, but what they all have in common is that they taste great! You’ll find sweet muffins dotted with chocolate chips, fruit-forward muffins with fresh blueberries or blackberries, and savory muffins that make a great breakfast. Many of these gluten-free muffin recipes are perfect for all kinds of diets, from vegan to paleo.

A collage of gluten-free muffins arranged on plates and in a basket, with the text Best Gluten Free Muffin Recipes in the center.

So pour that gluten-free muffin batter into your muffin tin and bake up some delicious muffins, guaranteed to make your busy mornings easier!

Hope you’ve enjoyed this list of the best gluten free muffins. From healthy muffins to bakery-style muffins, to muffins perfect for an indulgent breakfast, there’s something for everyone here. 

What is Gluten?

Gluten is a protein found in wheat, barley, and rye. It gives traditional baked goods their structure and elasticity. It’s what makes pizza dough stretchy and gives crusty French bread its chew. In regular muffins, gluten traps air bubbles and helps the batter rise. This creates the delicate crumb in a good muffin. The good news is that with the right balance of gluten-free flours and binders, you can create that same tender, fluffy crumb in a gluten-free muffin.

Why You’ll Love These Gluten Free Muffins

  • Soft, tender crumb with no dense or gritty texture
  • Big flavors from citrus to berries to chocolate to cozy spices
  • Great for meal prep, as many of these muffins freeze beautifully
  • Variety of gluten-free approaches, from using 1:1 GF flour replacements to naturally GF options like almond flour or buckwheat

What You’ll Need for the Best GF Muffins

Because this roundup includes a variety of gluten-free baking styles, you’ll see a mix of classic pantry ingredients and a few specialty flours. Here are some of the ingredients you may need:

  • Gluten-free all-purpose flour blend (many include xanthan gum for structure)
  • Almond flour, buckwheat flour, coconut flour, or polenta
  • Almond butter or nut butters (for richness and moisture in some versions)
  • Eggs
  • Baking powder and/or baking soda
  • Sugar or maple syrup
  • Oil or melted butter
  • Milk or yogurt
  • Vanilla extract and spices
  • Fresh fruit, nuts, or chocolate

If you bake gluten-free often, keeping a few alternative flours on hand opens up a lot of possibilities.

Besides the ingredients, you won’t need any fancy equipment for these recipes, though you will need a standard 12-cup muffin tin and paper liners. I also recommend an ice cream scoop for portioning out the muffin batter and a digital kitchen scale for measuring your ingredients (particularly important with alternative flours!).

How to Make Gluten Free Muffins

These recipes demonstrate that there are so many ways to make gluten-free baked goods right now. Sometimes you can just replace all purpose flour with a gluten-free flour blend. Or you might choose to use other alternatives to wheat flour: almond flour, coconut flour, potato starch, rice flour, and more. Xanthan gum is handy in a lot of gluten-free recipes because it mimics gluten and acts as a binder and stabilizer. Try some different recipes and see what you prefer!

A Few Tips for the Best Gluten Free Muffins

  1. Measure carefully, as gluten-free flours can be a bit finicky. Spoon and level your flour (don’t scoop straight from the bag), or better yet, use a kitchen scale to weigh your ingredients.
  2. Squeeze excess liquid out of moisture-rich add-ins like zucchini, as too much water can make muffins soggy
  3. Don’t overmix. Gluten-free batters don’t need aggressive mixing — stir just until combined. Overworking can lead to dense muffins.
  4. Make sure you know how to check that a muffin is fully baked. A toothpick should come out clean, and the muffin tops should spring back lightly when pressed.

How to Store Gluten Free Muffins

When it’s time to store your muffins, make sure to use an airtight container. In general, gluten-free muffins are often quite moist and so will last for at least a few days. 

Note that if you are looking for ingredients for gluten-free baking, I highly recommend Bob’s Red Mill. They have a ton of gluten-free products to choose from. 

Whether you’re craving something fruity, chocolatey, or protein-packed, these gluten free muffins recipes prove that gluten-free baking can be anything but boring. So preheat that oven, grab your favorite mixing bowl, and treat yourself to a batch (or three)—because every day’s better with a freshly baked muffin.

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